基于生物信息学的肝细胞癌组织miR-1180表达与临床意义分析
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丁佑铭, Email: dingym@whu.edu.cn

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Analysis of miR-1180 expression in hepatocellular carcinoma tissue and its clinical significance based on bioinformatics
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    摘要:

    目的:通过生物信息学数据分析探讨肝细胞癌(HCC)组织中miR-1180的表达及其临床意义。 方法:下载GEO(Gene Expression Omnibus)和TCGA(The Cancer Genome Atlas)相关数据集,比较HCC组织和癌旁组织中miR-1180表达量,并分析miR-1180表达量与肝癌患者临床病理特征及预后之间的相关性。利用生物信息学方法对miR-1180的靶基因进行预测及功能富集分析,并结合预后分析结果筛选miR-1180关键靶基因。 结果:miR-1180在HCC组织中较癌旁组织高表达,且对于HCC具有良好的诊断效能(AUC>0.8,均P<0.05);miR-1180的表达量与患者年龄、肿瘤家族史、肿瘤分化程度以及AFP等指标明显有关(均P<0.05)。生存分析表明HCC组织中miR-1180高表达是影响HCC患者预后的独立危险因素(P<0.05)。富集分析提示miR-1180的靶基因主要富集于脂质代谢、细胞迁移、转录调控等功能和脂肪酸降解等通路。PPARGC1A、ALDH2、SARDH、HMGCS2、ESR1、ETS2等为miR-1180关键靶基因,在HCC组织中均表达下调(均P<0.05),且相对低表达者预后较差(均P<0.05)。 结论:miR-1180在HCC组织中表达升高,其可能作为一种促癌miRNA参与HCC的发生、发展,并具有成为HCC诊断标志物、预后指标及治疗靶点的潜在应用价值。

    Abstract:

    Objective: To analyze the expression of miR-1180 in hepatocellular carcinoma (HCC) tissue and its clinical significance through bioinformatics data analysis. Methods: The relevant data sets from GEO (Gene Expression Omnibus) and TCGA (Cancer Genome Atlas) database were downloaded, and then the expression levels of miR-1180 in HCC tissues and cancer adjacent liver tissues were compared, and the relations of miR-1180 expression level with clinicopathologic characteristics and prognosis of the patients were also analyzed. The prediction of potential target genes of miR-1180 and functional enrichment analyses of the target genes were performed by bioinformatics analysis. Furthermore, the key target genes of miR-1180 were screened based on survival analysis. Results: The expression levels of miR-1180 were significantly up-regulated in HCC tissues compared with the cancer adjacent tissues, which had good diagnostic efficiencies for HCC (AUC>0.8, all P<0.05). The miR-1180 expression level was significantly associated with age, family history of cancer, degree of tumor differentiation and AFP of the patients (all P<0.05). Survival analysis showed that miR-1180 overexpression was independent risk factor for diagnosis in HCC patients (P<0.05). Enrichment analyses revealed that the target genes of miR-1180 were mainly enriched in the pathways associated with lipid metabolism, cell migration, transcriptional regulation and fatty acid degradation. PPARGC1A, ALDH2, SARDH, HMGCS2, ESR1 and ETS2 were the key target genes of miR-1180, with significantly decreased down-regulation in HCC tissue (all P<0.05), and patients with low expressions of these genes had relatively poor prognosis (all P<0.05). Conclusion: The miR-1180 expression is increased in HCC tissue. It may participate in the occurrence and development of HCC as an oncogenic miRNA, and also has potential value as a diagnostic biomarker, prognostic indicator and therapeutic target for HCC.

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余斌,丁佑铭,廖晓锋.基于生物信息学的肝细胞癌组织miR-1180表达与临床意义分析[J].中国普通外科杂志,2018,27(7):862-869.
DOI:10.3978/j. issn.1005-6947.2018.07.010

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  • 收稿日期:2018-02-26
  • 最后修改日期:2018-06-11
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  • 在线发布日期: 2018-07-15