尿苷二磷酸-葡萄糖6-脱氢酶在胰腺癌组织中表达及其意义的生物信息学分析
作者:
通讯作者:
作者单位:

作者简介:

朱克祥, Email: flexzhu6910@sina.com

基金项目:

国家自然科学基金资助项目(81960516);兰州大学第一医院院内基金资助项目(ldyyn2017-27)。


Bioinformatics analysis of expression of UDP-glucose 6-dehydrogenase in pancreatic cancer and its significance
Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 音频文件
  • |
  • 视频文件
    摘要:

    背景与目的: 尿苷二磷酸-葡萄糖6-脱氢酶(UGDH)是一种将UDP-葡萄糖转化为UDP-葡萄糖醛酸的代谢酶,通过参与糖胺聚糖在肿瘤组织中的生物合成来影响肿瘤的侵袭能力和耐药性。多项研究表明UGDH基因参与多种癌症的发生与发展,然而,目前尚无胰腺癌中关于UGDH基因的研究,因此本研究应用生物信息学方法研究UGDH在胰腺癌中的表达及其意义。
    方法: 基于Oncomine数据库分析4个数据集中胰腺癌组织中UGDH基因的差异表达;对TCGA中胰腺癌基因表达谱和生存数据进行生存分析。基于UALCAN数据库,分析TCGA中胰腺癌UGDH基因与其他基因的表达相关性,使用Pearson系数法,获得其明显正相关与负相关的基因,分别进行GO与KEGG通路富集分析。基于HGNC数据库提供的人类所有基因的注释,提取胰腺癌中所有mRNA的表达谱,利用GSEA分析软件,进行UGDH基因在胰腺癌中的基因基富集分析;利用GeneMANIA对UGDH基因进行单基因PPI网络分析,并进一步对网络中出现的基因用Metascape进行功能富集分析,用Cytoscape的MCODE插件对网络进行关键子网络分析。
    结果: UGDH基因在胰腺癌组织中的表达明显上调;UGDH低表达患者较UGDH高表患者总生存率升高、生存期更长(均P<0.05)。GO富集分析发现,UGDH及其共表达基因富集于内膜系统、RNA定位、蛋白酶体蛋白分解代谢过程、核质转运、核酸运输等与癌症相关生物学过程;KEGG通路富集分析显示,差异基因显著富集于内质网蛋白加工、自噬、泛素介导的蛋白水解、蛋白质输出、剪接体、RNA转运、mRNA监测通路、病毒致癌作用、长期抑制作用、结直肠癌、N-聚糖的生物合成、胰腺癌通路、鞘脂信号通路、癌症中的蛋白聚糖、肾细胞癌、人类巨细胞病毒感染、乙肝等癌症相关通路。GSEA分析富集于泛素介导的蛋白水解作用、氨基糖和核苷酸糖代谢、氨酰生物合成、卵母细胞减数分裂、肾细胞癌、基础转录因子、鞘脂类代谢、ErbB信号通路、黏附连接、慢性粒细胞白血病、RIG-I样受体信号传导通路、促性腺激素释放激素信号通路、胰岛素信号通路、子宫内膜癌、神经胶质瘤、神经营养蛋白信号通路、内吞作用、MAPK信号通路、胰腺癌等癌症相关通路。PPI预测及关键子网络分析显示,HGS、UBE2V1、MAT2A、SUMO1在互作网络中有重要作用。
    结论: UGDH基因在胰腺癌组织中表达上调,且与胰腺癌发生发展及预后密切相关,本研究结果可能为今后胰腺癌发病机制及分子靶向治疗的研究提供重要线索和依据。

    Abstract:

    Background and Aims: UDP-glucose 6-dehydrogenase (UGDH) is a metabolic enzyme that converts UDP-glucose to UDP-glucuronic acid, it affects the tumor invasion and drug resistance by participating in the biosynthesis of glycosaminoglycan in tumor tissues. A number of studies have shown that UGDH gene is involved in the occurrence and development of a variety of cancers. However, there is still no research concerning the UGDH gene in pancreatic cancer, so this study was conducted to investigate the UGDH gene expression in pancreatic cancer and its significance by bioinformatics approaches. 
    Methods: The differential expression of UGDH gene in pancreatic cancer tissue was analyzed in 4 data sets of the Oncomine database. Survival analysis was performed based on the gene expression profiles and survival data of the pancreatic cancer in TCGA database. Based on UALCAN database, the correlation between the expression of UGDH gene and other genes in pancreatic cancer in TCGA was analyzed, and the genes with significant positive and negative correlation with UGDH gene were obtained by Pearson coefficient method, and then, GO and KEGG pathway enrichment analyses were performed, respectively. Based on the annotation of the whole human genome from HGNC database, the expression profile of all mRNA in pancreatic cancer was extracted, and then the gene base enrichment analysis of UGDH gene in pancreatic cancer was carried out by using GSEA analysis software; the monogenic PPI network involving the UGDH gene was constructed by GeneMANIA, and the genes appeared in the network were further enriched by Metascape, and then, the critical subnetworks were identified by Cytoscape MCODE plug-in. 
    Results: UGDH gene expression was significantly up-regulated in pancreatic cancer samples, and the overall survival rate was significantly higher and survival time was significantly longer in patients with low UGDH gene expression than those in patients with high UGDH gene expression (all P<0.05). GO enrichment analysis found that UGDH and its co-expressed genes were enriched in the endomembrane system organization, RNA localization, proteasomal protein catabolic process, nucleocytoplasmic transport, nucleic acid transport and other biological processes related to cancer. KEGG enrichment analysis showed that the differential expressed genes were mainly enriched in cancer-related pathways such as protein processing in endoplasmic reticulum, autophagy-animal, ubiquitin mediated proteolysis, protein export, spliceosome, RNA transport, mRNA surveillance pathway, viral carcinogenesis, long-term depression, colorectal cancer, N-Glycan biosynthesis, pancreatic cancer and sphingolipid signaling pathway, proteoglycans in cancer, renal cell carcinoma, human cytomegalovirus infection, hepatitis B. GSEA analysis showed the enriched cancer-related pathways such as ubiquitin mediated proteolysis, amino sugar and nucleotide sugar metabolism, aminoacyl-tRNA biosynthesis, oocyte meiosis, renal cell carcinoma, basic transcription factors, sphingolipid metabolism, ErbB signaling pathways, adherens junction, chronic myeloid leukemia, RIG-I like receptor signaling pathway, GNRH signaling pathway, insulin signaling pathway, endometrial cancer, glioma, neurotrophin signaling pathway, MAPK signaling pathway, pancreatic cancer. PPI prediction and key sub-network analysis revealed that HGS, UBE2V1, MAT2A and SUMO1 played important roles in the interaction network. 
    Conclusion: UGDH gene expression is up-regulated in pancreatic cancer tissue, and is closely related to the occurrence and development as well as the prognosis of pancreatic cancer. The results of this study may provide important information and basis for future studies on the pathogenesis and molecular target therapy of pancreatic cancer.

    参考文献
    相似文献
    引证文献
引用本文

李文军, 任龙飞, 赵素月, 王乾合, 朱克祥.尿苷二磷酸-葡萄糖6-脱氢酶在胰腺癌组织中表达及其意义的生物信息学分析[J].中国普通外科杂志,2020,29(3):324-332.
DOI:10.7659/j. issn.1005-6947.2020.03.010

复制
分享
文章指标
  • 点击次数:
  • 下载次数:
历史
  • 收稿日期:2020-01-13
  • 最后修改日期:2020-02-22
  • 录用日期:
  • 在线发布日期: 2020-03-25