长链非编码RNA 909靶向调控miR-194-5p/DACH1轴对胰腺癌细胞增殖、迁移和侵袭的影响
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1.西南医科大学附属医院,超声医学科,四川 泸州 646000;2.西南医科大学附属医院,肝胆外科,四川 泸州 646000;3.西南医科大学附属医院,健康管理部,四川 泸州 646000

作者简介:

邓家琦,西南医科大学附属医院住院医师,主要从事介入超声(肝脏、甲状腺)方面的研究。

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西南医科大学校级基金资助项目(2018-ZRQN-077)


Effect of long non-coding RNA 909 on proliferation, migration, and invasion of pancreatic cancer cells by targeting regulation of miR-194-5p/DACH1 axis
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1.Department of Ultrasound Medicine, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan 646000, China;2.Department of Hepatobiliary Surgery, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan 646000, China;3.Health Management Department, the Affiliated Hospital of Southwest Medical University, Luzhou, Sichuan 646000, China

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    摘要:

    背景与目的 长链非编码RNA 909(LINC00909)是一个新发现的长度约为2 kb的长链非编码RNA(lncRNA),在胶质瘤和白血病中被报道发挥癌基因的作用。然而LINC00909在胰腺癌中的作用鲜有报道。本研究旨探讨LINC00909在胰腺癌中的表达及其对患者预后的影响,以及LINC00909与其调控网络对胰腺癌细胞生物学行为的影响。方法 通过Ualcan在线分析LINC00909在TCGA数据库中24种肿瘤组织中的表达情况。通过LinkedOmics在线分析LINC00909在176例胰腺癌中的表达及预后情况。利用lncRNA-miRNA结合数据库(starBase)及3个miRNA-mRNA结合数据库(miRmap、miRanda和TargetScan),预测LINC00909的靶microRNA(miRNA)以及靶miRNA下游的mRNA,并构建LINC00909-miRNA-mRNA网络。用R语言“limma”包对癌旁和癌组织的miRNA进行表达差异对比分析。利用R语言“survival”包、“survminer”包及“ggstatsplot”包,对所得到的基因进行生存分析及相关性分析。在胰腺癌PANC-1细胞上,用敲减实验(转染LINC00909 siRNA)分析LINC00909对PANC-1细胞增殖、迁移及侵袭的影响;用回复实验(同时转染LINC00909 siRNA与靶miRNA抑制剂)及验证LINC00909与靶miRNA之间的靶向关系。用双荧光素酶报告基因实验验证靶miRNA与LINC00909以及下游mRNA之间的互作关系。结果 Ualcan分析表明LINC00909在胰腺癌组织中低表达。LinkedOmics分析表明LINC00909低表达患者的预后差(P<0.05)。通过starBase数据库获得28个与LINC00909结合的miRNA,进一步通过对TCGA胰腺癌miRNA表达数据分析发现,只有miR-194-5p在胰腺癌中表达明显上调。通过miRmap、miRanda和TargetScan数据库获得114个与miR-194-5p结合的潜在mRNA。进一步对114个mRNA进行表达相关性分析及生存分析,获得4个mRNA(DACH1、SOCS2、STX16及SNAP91),最终获得LINC00909-miR-194-5p-DACH1/SOCS2/STX16/SNAP91的ceRNA网络。敲减实验显示,LINC00909低表达组PANC-1细胞的增殖活力增加、划痕愈合率、迁移与侵袭细胞数均较对照组明显升高(均P<0.05)。回复实验表明,回复组DACH1 mRNA的表达水平升高,且细胞的增殖活力、划痕愈合率、迁移与侵袭细胞数均较LINC00909低表达组明显降低(均P<0.05)。双荧光素酶报告基因实验表明,miR-194-5p模拟物能够抑制含有其结合位点的LINC00909和DACH1质粒的荧光素酶活性(均P<0.05)。结论 LINC00909在胰腺癌组织中低表达且发挥抑癌作用,其可能通过靶向调控miR-194-5p/DACH1轴来抑制PANC-1细胞的增殖、迁移及侵袭能力。

    Abstract:

    Background and Aims Long non-coding RNA 909 (LINC00909) is a newly discovered long non-coding RNA (lncRNA) with a length of approximately 2 kb, which has been reported to function as an oncogene in gliomas and leukemias. However, the role of LINC00909 in pancreatic cancer has rarely been reported. This study was designated to investigate the expression of LINC00909 in pancreatic cancer and its influence on prognosis of the patients, as well as the impacts of LINC00909 and its regulatory network on the biological behaviors in pancreatic cancer cells.Methods The expressions of LINC00909 in 24 different types of cancers in TCGA datasets were analyzed through UALCAN. LinkedOmics was used to analyze the expressions of LINC00909 and prognosis in 176 pancreatic cancer patients were analyzed through LinkedOmics database. By using the lncRNA-miRNA binding database (starBase) and three miRNA-mRNA binding databases (miRmap, miRanda, and TargetScan), the potential target microRNAs (miRNAs) of LINC00909 and the mRNAs downstream to these miRNAs were predicted, and the LINC00909-miRNA-mRNA network was constructed. The differentially expressed miRNAs between pancreatic cancer and adjacent non-tumorous pancreatic tissues were identified by the "limma" package of R language. The survival analysis and correlation analysis were conducted by using "survival", "survminer", and "ggstatsplot" packages in R language. In pancreatic cancer PANC-1 cells, the influences of LINC00909 on cell proliferation, and migration/invasion abilities were investigated by a knockdown experiment (LINC00909 siRNA transfection), and the targeted relationship between LINC00909 and the potential miRNAs were verified by a rescue experiment (simultaneous transfection of LINC00909 siRNA and miRNA inhibitor). The interactions of the target miRNAs and with LINC00909 and their downstream mRNAs were verified by dual luciferase reporter assay.Results UALCAN analysis revealed that LINC00909 was lowly expressed in pancreatic cancer tissues. Low expression of LINC00909 predicted poor prognosis based on data from LinkedOmics databases (P<0.05). A total of 28 miRNAs potentially binding to LINC00909 were obtained through the starBase. Further analysis of the miRNA expression data in pancreatic cancer from TCGA found that only miR-194-5p was significantly up-regulated in pancreatic cancer. Using the target prediction databases miRmap, miRanda and TargetScan databases, 114 potential downstream target mRNAs of miR-194-5p were obtained. After further expression correlation analysis and survival analysis of the 114 mRNAs, 4 mRNAs (DACH1, SOCS2, STX16 and SNAP91) were identified. Finally, the ceRNA network of LINC00909-miR-194-5p-DACH1/SOCS2/STX16/SNAP91 was obtained. Results of knockdown experiment showed that the proliferation activity, scratch healing rate and the numbers of migrated and invaded cells were significantly higher in LINC00909 low expression group than those in control group (all P<0.05). Results of rescue experiment showed that the expression level of DACH1 mRNA was significantly increased, while and the cell proliferation activity, scratch healing rate, and the numbers of migrated and invaded cells were significantly decreased in rescue group compared with those in LINC00909 low expression group (all P<0.05). Results of dual luciferase reporter assay showed that miR-194-5p mimics significantly suppressed the luciferase activity of the LINC00909 and DACH1 reporter plasmid containing binding sites (both P<0.05).Conclusion Expression of LINC00909 is decreased in pancreatic cancer tissue and it exerts a tumor suppressor function. It may inhibit the proliferation, migration, and invasion of pancreatic cells by targeting and regulating the miR-194-5p/DACH1 axis.

    图1 胰腺癌组织中LINC00909的表达及预后情况 A:LINC00909在24种肿瘤中的表达;B:LINC00909在胰腺癌病理分级中的表达;C:生存曲线;D:细胞表达谱Fig.1 The expression of LINC00909 and prognosis in pancreatic cancer tissue A: Expressions of LINC00909 in 24 types of tumors; B: Expressions of LINC00909 in pancreatic cancer with different pathological grades; C: Survival curves; D: Cell expression profiles
    图2 与LINC00909结合的miRNA在胰腺癌中的表达情况Fig.2 The expressions of miRNA binding to LINC00909 in pancreatic cancer
    图3 LINC00909 ceRNA网络的构建 A:分析与miR-194-5p结合的潜在mRNA;B:基因表达相关性分析;C:生存分析;D:ceRNA网络示意图Fig.3 Construction of LINC00909 ceRNA network A: Prediction of potential target genes of miR-194-5p; B: Gene expression correlation analysis; C: Survival analysis; D: Schematic diagram of ceRNA network
    图4 下调LINC00909对PANC-1细胞增殖、迁移及侵袭的影响 A:各组PANC-1细胞中LINC00909的表达水平;B:各组PANC-1细胞的增殖曲线;C:各组PANC-1细胞的划痕实验(×200);D:各组PANC-1细胞的迁移及侵袭实验(×200)Fig.4 The effects of down-regulation of LINC00909 on the proliferation, migration, and invasion of PANC-1 cells A: The expression level of LINC00909 in each group PANC-1 cells; B: The proliferation curve of PANC-1 cells in each group; C: Wound scratch assay of PANC-1 cells in each group (×200); D: Migration and invasion assays of PANC-1 cells in each group (×200)
    图5 LINC00909通过miR-194-5p/DACH1轴抑制PANC-1细胞细胞增殖、迁移及侵袭 A:各组PANC-1细胞DACH1水平;B:各组PANC-1细胞的增殖曲线;C:各组PANC-1细胞的划痕实验(×200);D:各组PANC-1细胞的迁移及侵袭实验(×200)Fig.5 LINC00909 inhibiting PANC-1 cell proliferation, migration, and invasion through miR-194-5p/DACH1 axis A: The expression level of DACH1 in each group PANC-1 cells; B: The proliferation curve of PANC-1 cells in each group; C: Wound scratch assay of PANC-1 cells in each group (×200); D: Migration and invasion assays of PANC-1 cells in each group (×200)
    图6 miR-194-5p与LINC00909和DACH1的靶向关系验证 A:LINC00909和DACH1与预测的miR-194-5p结合位点比对及示意图;B:相对荧光强度Fig.6 Verification of the targeted relationship of miR-194-5p with LINC00909 and DACH1 A: Alignment and schematic diagram of the binding sites of predicted miR-194-5p to LINC00909 and DACH1; B: Relative fluorescence intensity
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邓家琦,钱保林,张丽云,李明星.长链非编码RNA 909靶向调控miR-194-5p/DACH1轴对胰腺癌细胞增殖、迁移和侵袭的影响[J].中国普通外科杂志,2022,31(3):340-350.
DOI:10.7659/j. issn.1005-6947.2022.03.007

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  • 收稿日期:2021-04-28
  • 最后修改日期:2021-09-07
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  • 在线发布日期: 2022-04-02